Basic Information | |
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Taxon OID | 3300012953 Open in IMG/M |
Scaffold ID | Ga0163179_10586027 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 934 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 34.876 | Long. (o) | -13.1352 | Alt. (m) | Depth (m) | 80 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002093 | Metagenome / Metatranscriptome | 594 | Y |
F071273 | Metagenome / Metatranscriptome | 122 | N |
F099434 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163179_105860271 | F071273 | N/A | LEGDFTATLNNFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVACSIKTTFKYA* |
Ga0163179_105860272 | F002093 | AGGAG | MAYDNTLPAGGPGNFITPNLAHEGEGVRVDFLTVDYISDMSGEVTHSTASAATAGLKLAIEAIQNQGVNILGMGALGNSDTEQTYMVRADSLDTISSTTTVAAIQAAIRGLNALTPDKVTATISSATAADRDLSDTQVA* |
Ga0163179_105860273 | F099434 | AGGAGG | MPATKNNFTHVTDTELEGVETTMFTVDFINAMTAETGDLSTGSSTAGLEATRSVISQFINILAEGPLVESDKQKTYVVRTDSLGTLISGGTLQTAIR |
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