Scaffold Ga0163179_10296176

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10296176
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1278
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED156 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F004376	Metagenome / Metatranscriptome	441	Y
F050002	Metagenome	146	Y
F052639	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_102961762	F004376	GAGG	MKCLDCGCDEGTLFKEFQENPDQSYSWHDLAMMTEVCVSCGSENIKTESKE*
Ga0163179_102961764	F052639	N/A	VKKTKQKPTPTIKDYKEAIQILMVDYADVWEKTKTFKEVNKKLRKLGI*
Ga0163179_102961765	F002768	N/A	METKTSWWKLTIDDYPNYKPNDADLEHIAQLIKQGYDQGELIQEIEDDE*
Ga0163179_102961766	F050002	GGA	MKQYNVNRIHSDLNNFDMYLQEHFGRVSYDDDADVNACIKDMKYVSKRLKKLDRIEKVLRINE*