Scaffold Ga0163179_10092107

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10092107
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2174
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F042856	Metagenome	157	Y
F045687	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100921071	F042856	N/A	MNKQLQQQNLRELARLTFLNLMSANGVMAKTIIRNYKQKQERENN
Ga0163179_100921072	F045687	AGAAGG	MIRLIDITQDDIINGVQGDCEKCAIARALKREYKTNDVEVLAQDGEDVSLCVGKNQLNVRYENDVLDFIDCYDNMDDMDIPSPKPFTLQINE*
Ga0163179_100921075	F002146	GGAGG	MIKNILNFLDYVLFLGMMYILYLGLKHADQINQLIIELKGGAI*