Scaffold Ga0163179_10060361

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10060361
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2638
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F026404	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100603612	F026404	AGGAG	MTIYGKTLEIKNVTEGYTKEQVEQNIEQFTKDRNEALYDLYEMKRETLAFNEGGNKEGYCDLLDNTDFFTPEDFTDTYNVKGFTDEQVVKILGGFVQW*
Ga0163179_100603613	F006347	AGGAGG	MVDRIEQLITTLEQEINDGYNTLPDYQTNNEGKTYINGAQATLYELQKQIKELEQGLRLGKNFSLLGENK*
Ga0163179_100603615	F002747	AGGA	MAKDQRFYVNACIEIYVPDQGYGEKAMKNEQTDAEWFANEVASQIPKAINKNFKFSERPYSVNDVMVGKVERS*