Scaffold Ga0163179_10044808

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10044808
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3028
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F025414	Metagenome	202	Y
F031249	Metagenome	183	Y
F054844	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1004480811	F054844	AGGAG	MIKVGTLVAFRGSVGLVMGACKKRWAKPADVWVMWTDERKPKIESGILLEVLNASR*
Ga0163179_1004480812	F025414	GGAGG	MQVGSLVRETMDGNIGVILAWEHDGWLVNFPKHGMVFHMLPKLLEVVDESR*
Ga0163179_100448083	F004771	N/A	MKKRVRIGDLVTMYTHDTGLIGVVLERHPNGVEVDGEPTTQIGIKWFNGASSFEWEPEGWLEVVSEGG*
Ga0163179_100448086	F031249	AGGAG	MAKVGDLVRVRTKHTGEKLGVVVKIEKEGVRVKPQNHPHDILAVESDVKVLVSV*