Scaffold Ga0163179_10039137

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10039137
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3226
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y
F031481	Metagenome	182	Y
F054842	Metagenome	139	Y
F059941	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1003913711	F015346	GAG	MNHKLYKVGDLVAVASNRVLGIITRSNYWANDGYLGGEIECVDVMFGSSVSKQYPVQYLVEV*
Ga0163179_1003913712	F021674	GAG	MERETYNSRLKTNPEDIPVGSLLRVKKHCRKNVTIRHNGEYGILALSVNKGKYITHDVLFPNGTRCIYMPLNWEVVSYAR*
Ga0163179_1003913713	F006383	GGAGG	MLDSTDKMWAVQQPGTLLRGRSSHHYGRLALVLEKAYAGPTPSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIVSSHDTLGPEEN*
Ga0163179_1003913714	F022555	AGGAG	MAITPKFKPGQLVKYGNPAHDLVGLVKSTQFARRRGDPVFVLVQWCGKYRKQEEY
Ga0163179_100391373	F054842	GAGG	MSKKEWRKNLKVGDLVMMKTGGMAILTEVFFRFPETDPSYPHIKMIYCDDNTPGSCSAWRVEEVLNEAR*
Ga0163179_100391374	F031481	AGGAGG	MKPGDLVKREQGWMGWQNQQLGVVVWVDRAVVRVQWSGDYGTFAHPITSLEMINEGR*
Ga0163179_100391376	F059941	GGAG	VKLKLGTLVEFKAYNTVLDTGYVSKYDDDPKMIWVNYFKMGPQRVHLDSTMMEVISEAG*
Ga0163179_100391379	F006867	AGGAG	MLYGKELAQSIQKRCRIQPGMLVRSSAGGEINKLALVVGLSPACKFDRDYEGSEEHVFYKCEPFDGSPSFVDYVCNMEQVS*