Scaffold Ga0163179_10031863

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10031863
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3551
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100318631	F006867	AGGAG	MLYGKELVESIRKRCKIQPGMLVVSRPAGENEIPKVAVVMEVSPACEFNRDYEGAEGDIFYKCQPADGTPVFVDYAQNLREYS*
Ga0163179_100318633	F069451	GGAGG	MKPGDLVRIRKSAITAYSTLWFIDLADSKAPLLLMEQLNRRHWKVMKPDGNTFYVEEQNLTKRMW*
Ga0163179_100318634	F021674	GAGG	MERETYNSRLKTNPEDIPVGSLLRVKKHCRKNNIVKENGEFAILVERDGGKYISHDVLYPSGRRTIFVPMNWEVVSYAR*
Ga0163179_100318635	F006383	GGAGG	MLDSTDKMWAVQQPGTLLRGRSSHHYGKLALVLEEAYDGPMPSNGYPPRRYVKMQWVATGERFEEMLTNAHNCFDIVSKP*