Scaffold Ga0163179_10027632

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10027632
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3800
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F019151	Metagenome	231	Y
F024570	Metagenome	205	Y
F033836	Metagenome	176	Y
F066845	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100276322	F007343	N/A	MTNNNIPTKGNNTMRVSELQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNERYNYWEVPAFAESRAAYGEAKQRFCDQHGSE*
Ga0163179_100276324	F033836	GGA	MGNSMSISEYEFFGVSNNAYAKNTHSTISKGISGMAEKNKATTATQEKRFASMAKETEVKAATFCVLAFVLGLCCALMLGCKTSAKVEGGAEIIELKPLKMQELTYPVHDYSKICADCGFSEWTDSWCEAHMGETAFCSASK*
Ga0163179_100276326	F066845	AGGAG	MMNNRKKAIAMHNAGKKRFADIFTGCLAHGTLKQTQKKKKTFKLKKG*
Ga0163179_100276327	F024570	AGGA	MAYVAYEIRQTKETATGTRHLVRCNRLGKYAICSWVGSTGSVMGNPECQGNYDYVMKKWKKIQRKRQPVT*
Ga0163179_100276329	F019151	AGGA	MIVANERANKSLEVFNLDGAQAFEMKNETLKMCADDDGTLWRSVRGLEVKDADGNTVFSLSWSETGVCGTVHDDDFLVEITEEF*