Scaffold Ga0163179_10021436

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10021436
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4285
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005038	Metagenome / Metatranscriptome	414	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100214361	F004990	N/A	DMYGDPKKKCCSCENGADLKENNKYYCCDHYAIHVLGKTMAQIEKELKGYELDI*
Ga0163179_100214363	F011253	N/A	LENKVLAGGVPKLKDRSVDIQNIIKRIVKSKSFPYSNAVKKIKKDRKGYYQQKDIKNKQKTLSSDRFQQYLKEIQDNDNSS*
Ga0163179_100214364	F004629	AGGA	MTIPVKLTVNELDNMFQTATYVERYLPSPHIKNQKTDMFNLIERLFGIGKDKDCYKGADKPKIKIRLNGEQLAIYEFCLCLLIKADEKDRDIIQLRNFPNRRSFRQLQRFFLPNSHEKVRNDYYLALYQLIKLYHLKGKKYFLK*
Ga0163179_100214369	F005038	GAGG	MKNKDINIYKLFSATYKNRKMFSFMGFGELSIMPKVDKPIRQVSNVYQFPIKQYYNQKRRVK*