Scaffold Ga0163179_10017247

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10017247
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4758
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F004327	Metagenome / Metatranscriptome	443	Y
F011629	Metagenome / Metatranscriptome	289	N
F036692	Metagenome	169	Y
F077379	Metagenome	117	N
F095622	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100172472	F077379	GAGG	MLTQKALTRNTTATLCNTTNTLFVHKNNKPHLQYTVNSNKVIRNLTQQQLNAFNMLPATFMQSAKNFVANTLAIKTLLNK*
Ga0163179_100172473	F003769	GAGG	MQQLKTITKKTTTKVESVHMDTLYKVIENCYERLEVVEADCTSASYFLNSANIFAQLQMLYVENETNDYVSLQSIMDVFTNNITYYDESSLFEFVVENTAMQNVKLENYTYLSN*
Ga0163179_100172475	F004327	GAGG	MANRQFIKIGTKVDTKWGEAKVTGIELCKNGEKYGIDMDKIFVEDKDRCTFDMDNGHWSYGYQIEVAV*
Ga0163179_100172476	F095622	N/A	MRANMQYNTTLIKLAKTFLANKNVEVYFDDARNEFSISVDVHNNRIWTDGNRGLWSTVAKGVKVRHANFLVTKDDDDEDSYWSGGLAGTVHYDGSGEDGTWYDGGDEETALINKVKDKESDGMIYTDTAFLVNLQKYMVEHCDFDEQLNEYLDFDYSEQGMQEDEYVNLDVEMDGDFWLYVIDEMKRDGIAHRQIGEEDIIITAVA*
Ga0163179_100172477	F036692	GAGG	MENTVYVLQLQGTGDDEYAFENAGVFTTQQQATEKLAYINAEYDMLVFELNENARIETHTINA*
Ga0163179_100172478	F011629	GAGG	MLNTQEVKDLVRTRFGGSLKQVYLNKCYSNKKEMADKRNMAFAVDGDVYKGVDFTALAREIGCKRVRLHTAFLRGMQSGAWLRLQHVQYDK*