Scaffold Ga0163179_10012409

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10012409
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5572
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031465	Metagenome	182	Y
F054002	Metagenome	140	Y
F095397	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1001240912	F031465	GGAG	VDKLDRQVLKRVRETLDNILRDNERLEQFDVTVGNASFSDDEVTFKINLKIKGAKSQSQKDLETFGEMDNLDLTKIAKLDGKDFSLSGFRRKARSKPYLIQDLKNGGEYIITTEIAKKYFGKGEIA*
Ga0163179_100124095	F095397	N/A	VFRFLYEDTVMTKQGYIIIKVEHDADNLEIICRDCEWDIDHDLLVDAKIIGYVEHDPEFDYEVLH*
Ga0163179_100124099	F054002	GGA	MTKLLMSYMIIGHKNYRGVRIMKITIEPKDRVELLKYVNMLREFNCNTSEKIPISYEHVCEMETLMFRLANLLQFSQPHKGGWYSDYFLTEHLPKEEKE*