Scaffold Ga0163179_10010867

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10010867
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5953
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1001086710	F000720	GAGG	MTLIKENKGVRKEIPNRMMSATFALPIDGRRVVGILDYTANDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVVGQMANYLHKNMEDIIMGKPPEKKQRELSTDPYAMKE*
Ga0163179_1001086711	F011410	AGGA	MKDFKIKLEWSTSDFLTWTVLAIGIGLCVVNLVTIYNIYSVIETMWLEIQQVKETNISLFQFIEAHKNDFD*
Ga0163179_1001086713	F004988	N/A	MPKLVETICPRCDGNGYIKVKQKENMVEHDCPMCLEEFLHMGGMVTTNNGYVMLPIENTRINVEGGRESITKWSGETLPEKGKDGP*
Ga0163179_1001086714	F003020	AGGA	MPDISKFKSVSVSMDTHDKLMTLAQKRFEVPVSVQKVIEFLLEKEIKKKKNAKTR*
Ga0163179_100108679	F009812	AGGAG	MDEFEIEWIPEDTGAPYEAADILPDIPSHTIDKICKKKYGHTNWARMGQMTPEDLIGNPHVFDYENGVIFFKNAHMV*