Scaffold Ga0163179_10009765

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10009765
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6283
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F017285	Metagenome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100097651	F017285	N/A	LKRTKIDLATGEKVTNKAAKAARMKNVTCGYCKERGHTRRTCQHAKRDKQIFVEETRRMRIAALESAREVGIGIGSMLPIRSTGYDKDGEWRRDILTIRYVQSVLWDDCHANRPTLIVKHVDARKLGAPNQSPYTSRDQITKLVQANDTALRYAAAEGQDLPPSSLIPTLDPPKGWLQPTEQSLKVAIKQAFPTTGNEYAKSRNYDYAYPSGITVQVIKDLGLEEHYDMRNT*
Ga0163179_1000976510	F008590	GGAG	MQVGDLVTYYFQRPRWRKGESVHVGLVVETGKYTGNKDVKVMWKLMGEKDDTKIYTATEASQHLSLVDDSLTT*
Ga0163179_100097656	F014672	N/A	MSRFKPGDLVRIKDGTHQDGIPDHRVGMILEVGETSKSYTKAYTIVFLGTDIQLKFHAMFLEHFTTP*
Ga0163179_100097657	F009562	AGGAG	MLAIPLIRTDDDTNITPIERTALACEQVITALMMQATLMDPTISDQEAETFTTLSVATIIPAEA*