Scaffold Ga0163179_10006097

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10006097
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7975
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F006609	Metagenome	369	Y
F007052	Metagenome / Metatranscriptome	359	Y
F025857	Metagenome / Metatranscriptome	200	Y
F046020	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000609710	F007052	N/A	MRLIMKKNETYFVAKLLKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSVRV*
Ga0163179_1000609713	F046020	N/A	MWVSIILFTFSVSAQLDKHFESEKSCWNFYENHPLLYRQIDDSFHKNYPIRLYQNKKHGLVWLTCEKLKHMRGNDVSIFPLNIPLPTPTKK*
Ga0163179_1000609717	F006609	AGGA	MDNELLKRLVAIIARFDQGITEAKGGEGIDKPAIREAKLILSDDGNTSFVYDLNHNEAAEIVGQFSLFKKGEDEVVTPIPLSNLVKEGTIEGIATKDILLN*
Ga0163179_100060973	F025857	N/A	MTLHRIAPGCTFESEDEIVSNPIVGKKISVPTNTPKPYYRTSELDDIPDDFVERMKKFKRVEVRKEERKVETPDGFAVSVAYNKSGYQLIPKEDL*
Ga0163179_100060978	F001048	GGAG	MKIKSTKQFWWRFNYLVKNGAQITITDRTPEMDVKEHNRIGMLVNARVRWELGPEGFMKWDSCGYKDIPTLASAYGIV*