Scaffold Ga0163179_10004507

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10004507
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9351
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F004327	Metagenome / Metatranscriptome	443	Y
F007226	Metagenome / Metatranscriptome	355	Y
F095622	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100045074	F003769	AGG	MQNFKTITKKTTTKVESVHVDVLYAVIENCYNSLQVVEADGTSASYFLNSANIFAQLQGVYAENCHNNYVSLESVMEVFANNITYYDEEYGLYESVVEKTALAKVKLQDYACLSN*
Ga0163179_100045076	F004327	GAGG	MADRKFIKIGTKVNTQWGEAKVTGIELCENGEKYGIDIDKIFVADKNRCTFDMDNGHWSYGYQIEVAS*
Ga0163179_100045077	F095622	N/A	MRANMQYNTTLIKLAKTFLANKNVEVYFDEARTELSISVDVHNNRIWTDGERGLWSTVAKGVKVRHANFLVTKHDDDEEWSGGLAGTVHYDGSGEDGTWYDGGDEETALINKVKDKESDGMIYTDTAFLANLQKYMVEHCDFDEQLNEYLDFDYSEQGMQDDEYVNLDVEMDGDFWLHVIDEMKAEGVAHRQIGEEDLIITAVA*
Ga0163179_100045078	F007226	AGGAGG	LQKLLNRITLYFLNRAFTQMEQSGDLQNADDVAEHMEDYFTNFVK*