Scaffold Ga0163179_10003918

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10003918
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10045
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000774	Metagenome / Metatranscriptome	896	Y
F001294	Metagenome / Metatranscriptome	729	Y
F045426	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000391810	F045426	GAG	MQNQKTKKLSKKSKPHIVDLSNDGAFTVVSLSDHLTKFWKNKKKKIWKVLNKEGQLDKRFITQELPHWQDIWIKRGIKIRWDRRQRSFFLSTVKIK*
Ga0163179_100039185	F000774	AGAAGG	VTIEAPVMITSNKIAVWMDETWMHDFFDFLKHNKIKLSALQHKQRKLKLTFVTPKECTMFGLKYASRKK*
Ga0163179_100039188	F001294	AGGAGG	LSKIDLEVADSLEFEDGDIAVIIKQDGSIGRVIMPKMDKEILETEGYRKLLDVVDILQPGSKEKFIKYTMKTKGSIH*