Scaffold Ga0163179_10003379

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10003379
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10858
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F003423	Metagenome / Metatranscriptome	487	Y
F028814	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000337910	F028814	GGA	MSILIMMKEGGSLGIDTIGNLPIDEDIDLLPEAGGAINVDLQLMLWSDTGFALQYLDVDEMLLLGA*
Ga0163179_100033794	F003423	GGAGG	MEEFDAPENGVKQMRETIDRKDESIKKLEAELASYKDKEIDNVFGQLGLSTNNGFGKALKQVYDGPVDTESIAQFAKDEYGYESSGQVQEITQPAPETVVQDDARARVAALDANSRSDVPLDANEELVNALRTASTEDSIKAKLNFMEQQKQQQK*
Ga0163179_100033796	F003196	AGG	MQLQKEVLIDISDNATNSSAAQCDGLLLSGIVFPAAMTGSTITFDFSFNGTTWYDVVETDGTEVSYSVSAGNVVRVDPSGWAFASPGFLRVTSSNSEAADRTINLIFKQS*