Scaffold Ga0163179_10002100

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10002100
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13960
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (63.89%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F041168	Metagenome	160	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F074757	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000210012	F059942	AGGA	MKVGDLISFKPIDFGLEDWSNPCIVMLEYDSPNEGLWSVWCDGVFCVIDDTNYEILHLTSSSLDDGAAG*
Ga0163179_1000210013	F018286	GGAG	MNILTTFILLGMVDSHDEHFATVELSTNPASNGGPATAVMPVSAFPCEIYEGKVFYVVKLHDDEDATIVCHKERPDESR*
Ga0163179_1000210015	F030886	GGAG	MGYHDRKPPDYERVGIGVVNPLMRIERKLREVQDILDNISDASVLTANDLKIKIQRILDD
Ga0163179_1000210019	F041168	AGTAG	MKQAKVRNRTVGFFRRDAEAPFINLEMFETIKDATGIPHYWRDSEGNISQFWHEGVIPKGTGVMCKHRERGMKHTFWVVTDPESDLVGKMFIVGHTFKDRKETTDERFEYSNVSPTLKYSILAEKPLTK*
Ga0163179_100021004	F074757	N/A	VKVGDLVTLSSYCLQRADMWTWRQKIWFDKKPLVGLVVRVEDNPWDKSLSLSTNEKTFYYINWVQEGPGSRYGRTYHRTDGYFLRNDLKFVKKGDFK*
Ga0163179_100021007	F057352	AGGAG	MKLWVLYGTYESELFSSIHLTEKGCALAAIADVLDFLGVGDEESALQVMNDCYAYTETDGKQTEAFEWDHDKMKEMSSKDLWKIFTDWTEISWDRMADRSYNIDAAPQMVQA*