Scaffold Ga0163179_10001684

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10001684
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15475
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F014672	Metagenome	261	Y
F017285	Metagenome	241	Y
F026439	Metagenome	198	Y
F054844	Metagenome	139	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_100016841	F105146	GGA	MIEVGNIVKSRYTVERHRARIGLVMKVRDGAFENQPLVQIYWPHSRTLGWTPARDMEVVSD*
Ga0163179_1000168412	F014672	GAG	MGAFKPGDLVRIKDGTHQDGMPDHRVGMIVEDGHASENYSGPYTIVFLGSDVTLKFHEMFLEPFTTS*
Ga0163179_1000168413	F009562	AGGAG	MLAIPLIRTDDESNLTPIERTALACEQVITALMMQSTLSDPTITASERETFTTLSVATIIPAEA*
Ga0163179_1000168415	F008590	GGAGG	MQIGDLVTYWYQLSRWREGLSVHVGLVVETGKYTGNRDVKVLWTNEPEPQTECTQHLALVDDISLTT*
Ga0163179_1000168418	F026439	N/A	MYRKKGDYSMASQLDHVTLYADAVQQFEDCILPMIQEDEKNLGHVDIPARSEAWSNFADDLHANEQISDWQVANWVHPDSCND*
Ga0163179_100016843	F054844	GGAGG	VLKVGTLVAFRGSVGLVMGACKKRWAKDDDVYVKWTDESKPKIESSRFLEVINASR*
Ga0163179_100016846	F017285	AGGAG	MSWSGTVTCSHCYQRGHNKRKCPSLTAQIKSQYEGNMLAAASEREKGNENDAEWYESRAELKRQEYMKRTKIDLATGEKVTNKAAKAARMKKVTCGYCKQRGHTRRTCPHVKVDKQIFVEETRRMRIAALESARETGIGLGSMLPIRSTGYDSDGQWRSDILTVRYVQSVLWDDCHANRPTLIVKHIDARKLGAVNQSPHTSRDQITKLVQANDTALRYAAAEGQDLPPSSLIPTLDPPKGWLQPTEQSLEKAIKQAFPTAGNEYQKSRKYDFAYPSGITKEIIKDLGLTEHYDHVNWS*