Scaffold Ga0163179

Basic Information
Taxon OID	3300012953 Open in IMG/M
Scaffold ID	Ga0163179_10001085 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012953 Open in IMG/M

Scaffold ID

Ga0163179_10001085 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19428
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (73.68%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19428

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (73.68%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	North Atlantic Ocean
Coordinates	Lat. (^o)	34.876	Long. (^o)	-13.1352	Alt. (m)	Depth (m)	80
Location on Map

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Source Dataset Sampling Location

Location Name

North Atlantic Ocean

Coordinates

Lat. (^o)

34.876

Long. (^o)

-13.1352

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F022423	Metagenome / Metatranscriptome	214	Y
F023355	Metagenome / Metatranscriptome	210	Y
F025614	Metagenome / Metatranscriptome	201	Y
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000108512	F023355	AGAAG	MALPGAYVVNSPKSGEFCNNCVHYSNNYCLKFNKEVAPFGWCAVWQEVNLEV*
Ga0163179_1000108517	F014085	AGG	MTESLSDIREIAIERAGNRCEWAYCGDNKWLELAHIQGIGMGGSKKRKFDINNVAILCKYHHDIYDGRQRVGTSVAYRDLLKGFLKRESNL*
Ga0163179_1000108519	F025614	GGAGG	MDKKIDINNINIFTHPRYMKVWANQFNKACGSDTFKVQPDMEKLRFLMDKFVIDYNYHLEQLGEEE*
Ga0163179_1000108523	F022423	AGAAG	MAQDLSFISKTIQTMTESVQNTETLHKIIGTANQYAMTMKFPLDKTEWSDKQLDKYLSMIEKLVEMPVEYTQDDFESMDLLEKLESVGLKATEIEPGLQESGDMLGDIVNKMEQQNKYRDDLKCPCPNKLMVWDNRKSKKSDKSPDFTCSGKTPMECPMHTGKWKKSWWLDNSDIPEEWNLDGEQTTA*
Ga0163179_1000108525	F040134	AGG	MNDSDVKSIWRLQSIEYSGLGDKPHFILMNDNGDFKMEPIERGIHNLRKLLDLEEE*
Ga0163179_1000108527	F010091	AGTAG	MIVIPNTAGIMNTMNIDELLNEAENGKRTAILNRITEEAKPFWDGCEERVIAGRPIKPYVVSRLLKEHYNIKISESAVRNHFGNLASNVEG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0163179_10001085

Overview

Ecosystem & Geography

Associated Families

Sequences