Scaffold Ga0163179_10000275

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10000275
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35972
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (67.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016883	Metagenome	244	N
F029900	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000027533	F029900	GGAG	MNKIVTILLCFFTVGFSQMATIKNSIVGYTTISEKYDPEGSDDRNGDEYKDHFVFEKPYVWSFIKGDDSKWGISMFLDAPWARGSVYVEELYYKPYTDKFTVVLGRQPIPFGSNVPYLDLTRGDKFTYQTPTPNDVGLLYFGDGVTIYGGVGKWFLESYYGSDIENGFEEYTSGRVSYEFGDHFVGVSLDDQNKQALDISGYSEFVDYVTEFREDYQWGRAVIRLPNMWHLKGLGLIGGLERTEDETQALYGVVYQYGESNQFVSAELSGEGDLKVKLYYGFTLKVGKENE*
Ga0163179_1000027549	F016883	AGAAGG	MSKSNTTFSKAWLEKKIMCGLCNFGCCNHNSFHVEITEEEQEKYQKKFGLDLELEWQQNGCCDLLSKDGSGCSLGDDRPVFCKMYPLEPNKSNRIILGNWAFLHCPKPQDYELDRIEEGKYHYKLKKSHKNKRDELILDDKIENIVHQIWLQSKKALIETYGEEFYEKIKIEMKQTINHEFF*