Scaffold Ga0163179_10000047

Overview

Basic Information

• Taxon OID: 3300012953
• Scaffold ID: Ga0163179_10000047
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93699
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (68.87%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 34.876
  • Long. (^o): -13.1352
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040391	Metagenome	162	Y
F055656	Metagenome	138	Y
F066145	Metagenome	127	Y
F068135	Metagenome	125	Y
F097139	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163179_1000004758	F068135	N/A	MKYKVGDIVLVKSSAGEVIPKFHVKLVERIVRNPPKDPSYVIWRAHLTRQREAAILRKEWQMPFKFPNDIETFVLEMNIIRKERKMKKRKSRRRAQ*
Ga0163179_1000004769	F055656	AGGGGG	MLDFLLLILGVNCLTFAYFGYKFMQFRKNEKYRTQELNHRVQCLLDQMKQEYQSEREAELNENPAANIFREHVIDEISKQRLIYDEESGRYIRLRQIK*
Ga0163179_1000004784	F066145	GGA	MARKKKKTTQPIEEVEIFSRKTKKSRIIFPLSKEIIIYNDELNEFQLLPAISASYDKDNEPNNERER*
Ga0163179_1000004786	F040391	N/A	MAKKNSSTELVKRIIKQISGELTEDDKLIPEVAIDGSGEIWLWDPAHRIHRKVYRGVKAFILYENYDNFGRTLIYTHSGDMVCIEPEELLHTGYD*
Ga0163179_1000004790	F097139	AGGAG	MKLLMENWRKFVNEETDATGAVPSHLLRQQNRQRDAQALLKSMGFSVRRELGRGVFGVVYEIENSRTGERLAAKVVPADNAREIENYKFAMDEKAFMPEKYAKYLPDVKKLITGGDSTIILMELLEPLDPQTAQDLFAAQDAPTASIKKDKILKNPEAVAEITKYALQNNRILDQMREFLVNRDQIVANVINAVTKISHGGDVQSVIYTVATETAKQINFQSPAVKSSFEDALTDTVLYYFDKQVVPVHQPEPGDEETDRDLWAGPTFKAVEDLFPEAEGLMAAMKYFMQDKGWRPKDVHIKNVMRRPDTKDFVIVDLGLFKRGIYENLNVKVKKKAFTISDAYLAFILNARMQGNISPKVLLNPNNQNLLQHIKDYNPRKNEVSDEELHSYIRGK*