Scaffold Ga0163180_10607911

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10607911
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 833
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F053336	Metagenome	141	Y
F054095	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_106079111	F019151	N/A	DEKARDGLELFDIDGTESFEMKNETLRMCADEDGTIWHSTRGLTIRDADGNALFTLSWSENGVCGSLYDDELTVEIEEEF*
Ga0163180_106079113	F054095	GAGG	MIPQWKMNGKDMRFNGDMEIGVVEVRDLFDDLVVTLWVDQEESGSIAVKTLGGIGNGRYSVQILPREKPVEEGEGWKEL*
Ga0163180_106079114	F053336	AGAAGG	MERTMNEYFEYLTNLRDGGTMNMMWAPTMLQSRFDLSVKESREVFQKWCDSLAES*