Scaffold Ga0163180_10240691

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10240691
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1257
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F059941	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_102406912	F006383	GGAGG	MYDKMWEVQQPGTLLRARSSHQYGKLALVLEEAYVGPTPSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGAEEN*
Ga0163180_102406913	F021674	GGCGG	MKRETYNTRLKTNPEDIPVGSLLRCKKHCRKNVTIRQNGEYGLLVKTINKGKYITHDVVFPNGTRCIYMPLNWEVVSYVR*
Ga0163180_102406914	F015346	GAG	MDHKLYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGSSVSRQYPVRYLAEL*
Ga0163180_102406916	F059941	GAGG	VKLGTLVQFKARNTVLDTGYVSKYDEDPKFMWVECVKMGPQRVSKDSTMLEVLSEAG*