Scaffold Ga0163180_10092544

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10092544
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1911
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040056	Metagenome / Metatranscriptome	162	Y
F073529	Metagenome	120	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_100925446	F073529	GGAGG	VKVGDLVILRTGRYNFAPQKGKPKWVFADVVGVITDDRGFVDGTAEYKVYTTDGKHTWSHIDDLTIVD*
Ga0163180_100925447	F077179	N/A	MEVRTVKQEDYKPGDLILFFHGNSRFEEGPEEFGWIVHRDHDDPSEPAVMVGFPGRPDNLLHYYDLELREWEKAGTIEVKRG*
Ga0163180_100925449	F040056	GGAG	MQTHADFRIGTLVRWNGDDTEGADIDELGIVIQIHEASAYYHIAWSITNTVTHHSPEMIEESLYQQQMEIIG*