Scaffold Ga0163180_10072997

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10072997
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2123
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_100729972	F009812	GGA	MTDDELEFEIEWIPEDTGAPYEAEDEVFPDVPSHTLDKWCQEKYGHTNWVRMGMMSPTDLVGNPCEFDYINGVIYFKNKILV*
Ga0163180_100729975	F000720	GAGG	MSLIKENEKVRRQIPNRMPSATFALPIDGRKVVGIVNYDVTDTGIIPMAFWVKLKPTDSYLDRELRASGKLISRCLQNNESLKDLVDTLSQDNVIGQMANYLYKNMEDIIMGKQPEKKQRELSTDPYAMKE*
Ga0163180_100729976	F011410	N/A	STSNLLVWTVLGVGIGLCIVNLVTIYNIYSVIETMWLEIQQVKETNISLFQFIEAHKNELN*