Scaffold Ga0163180_10050872

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10050872
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2493
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005351	Metagenome / Metatranscriptome	403	Y
F009959	Metagenome / Metatranscriptome	310	Y
F050305	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_100508722	F009959	N/A	MTEDEVIDKVCDRVVNTIYNELDYYMFEELGYTETNEQYVKDADKLINKIINNLTK*
Ga0163180_100508725	F050305	N/A	MNNLNTTIDKIAMSEFDMHYYQLGENEKQWCHDEMVNNKEWLKKDWEKPLWSVSDKWKAGLPIYKTYVTD*
Ga0163180_100508726	F005351	N/A	MYNTNNPSNWSWSKAFDEMEKTVHQAEMTQQIINHLHNYDGGEKEFKQLDKENQEEMYNILTQIL*