Scaffold Ga0163180_10034661

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10034661
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2962
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034139	Metagenome	175	Y
F038722	Metagenome	165	N
F039181	Metagenome	164	N
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1003466110	F101298	N/A	QKVLEALTSFDKKLSTLESVVRQLAEANVNYATSQQNLNKEQSELNRDLGEGIKMLGDNLAKVIQFLQKIGGNN*
Ga0163180_100346613	F039181	GAG	MPKGKYYEYQIKRSALDNDYLSGNIDDFQYARESLDLDLKYEPYILAQTINSEIAKKQHENN*
Ga0163180_100346615	F034139	GGAG	MKLEEIYEQLNSFVEKEDKLISRWPCDSDYNVPTWDKIYDALDILDSIINYEPCDAELEAYNSSYSDPPHVVNQKMLEMKSASHGRRFV*
Ga0163180_100346617	F038722	GGAG	MNITESRDEAFEAIAEMLRSNIKKTKIASQLAADYCVSDKTVYKWITRVEEMYDIEPIESILQQQKTELKSEIYQDLIRDYHKAKTDKDDELRRKIGAILNNTYLKKITFN*