Scaffold Ga0163180_10033519

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10033519
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3008
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F004869	Metagenome / Metatranscriptome	420	Y
F013897	Metagenome / Metatranscriptome	267	Y
F056679	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1003351911	F013897	AGGAGG	MNLTKDQLLALMNTIDYATDNDASYEEYTIIRSGTFDLEPIRDILYNEYVNKGDS*
Ga0163180_100335194	F004869	GGAG	MSYDTEHYYAVQSFLEDDELCKIWNIIEIAMNREGYDVENAELSMRLYDPELTENVEHDYLDSLSEGYDTKVDALVDSMGVSDKLVSQRHERRDLDRL*
Ga0163180_100335198	F001479	N/A	MICGIHSYMLYNKYINQRRPTMSKEMLFLCDVYDKFLEENDLPHRSACDILYGENAMALTSNQKYWLESFVSTWDVIAENC*
Ga0163180_100335199	F056679	GGAG	MKLVTHIDVHERLDEDISFQINNALGLWSAKNDADLWEDVRKYMFPYTLKSVEFEKNRPHSLTSYK*