Scaffold Ga0163180_10019348

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10019348
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3870
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033221	Metagenome / Metatranscriptome	178	Y
F045370	Metagenome / Metatranscriptome	153	N
F058106	Metagenome	135	N
F067121	Metagenome / Metatranscriptome	126	N
F080521	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1001934812	F067121	GAGG	MINKIAKLFVKKKPTFFEKAKSTATSYGSKAKAKSMDAFGKMQKTKIYQDASSSIGELSAKYKKLPKNYKTGIKVAGATAVVGGAYAAGKSKGRKS*
Ga0163180_1001934814	F045370	N/A	MNRIFPTSSGTNVSGNWKTKAKQHIKTGKKFINKKVIPSATKNYKSYVAPTVGLFKGAARLATGVGKLALRNPLLAAGTYVATKAFNPKGKFAKGRKFHEFGDAGKVLSKGGKKIFYG*
Ga0163180_100193483	F058106	N/A	METKSAEERKAYVDEQIALGNPKYKDRNTWLKENADKIRISKLEAQVNEILAKLPK*
Ga0163180_100193484	F033221	AGGAGG	MIPYNVEVQLEGDINRCGNYITVNYEFPFPEDSILAERDKEAKRIQQSFVNNVKQSLINNN*
Ga0163180_100193485	F080521	AGGAG	MNINTVWTNTIDSISSVKDKVVDKYNNTNMNPFPKNVNVTVKFDLVGTYSDLLKKFDSMSDKDMQRVVDILEKKSDIIQKIIVNKLDK*