Scaffold Ga0163180_10011727

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10011727
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4909
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021015	Metagenome / Metatranscriptome	221	N
F023712	Metagenome	209	Y
F061257	Metagenome	132	N
F061923	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1001172711	F061257	GAG	LVKKYGLIYEVVMRDMKDINKWKEFFNEVAAACNYWELGFGDINPEMEMEVVRECFVEGWTAGHTCDAWREAVVEEMHDAR*
Ga0163180_1001172712	F023712	N/A	LLTFGEKYDLINGVMRDKMTYKLTWKNEDTNRVSSKEFTGEAGKDHSAMDAAMELAQEADGNLWPWVLERDGHEVASGWGGDQLNRGRLFPTCG*
Ga0163180_100117272	F021015	N/A	MGLNLNYTKPDGQAANYWKISRVEDWFQGTDPESSQYMANVNSLGFTNETYRDAGAPSVDGNMFTCNYASGTDFYPYYDLTGASGTITGSERAVPLPDGWDPLENGVSGWMQRSDDIRSGAYTWLKVCVPFFSGATDALTEGE*
Ga0163180_100117276	F061923	N/A	MRLETRENISKQGAEIASVRGTLQALAESWGNDYDHVKYLQKRIADMEEKLTNVQNTLAEIEYSEEIDWLGKLNE*