Scaffold Ga0163180_10008290

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10008290
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5761
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F019113	Metagenome	231	Y
F028360	Metagenome	192	Y
F034892	Metagenome	173	Y
F039585	Metagenome	163	Y
F042854	Metagenome	157	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y
F100958	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1000829010	F062279	AGAAGG	MYERMKALLHHCINLVMAVILVGALCSYVIINSILMTRVINDLQLDSYVGLDTGLGVVMLILLLGWGPVWLTRSLRKRP*
Ga0163180_1000829014	F028360	N/A	MKDYKPHITMLKVEIKNEDESVLTVDLSDDFVKWFKVTHNLKRWAPKQFKNWLIKVLEGDTRS*
Ga0163180_1000829019	F039585	N/A	VRTSTLKAQEKDLEAWEADCLEYFTEIMEIQKFREMLSHGADAMMRRYERGNLTKKELDSTLAVWHTTESELRQKVTKIYDTAYAAKCFETPSP*
Ga0163180_100082902	F100958	AGGAG	MVFHGDYEVDFEIYEKREGDWRSQLLGYMTGVSPEDAKERWMEAHEISQERNQRIHAIPALEEWR*
Ga0163180_100082903	F034892	N/A	MAIDVGDLIRIRGKDWLGKRLGIVTEVRALVHDQSGTEYNAVTALIAGQYYTFPDDAFELVTAAERKKN*
Ga0163180_100082906	F019113	N/A	VSERFEVGDLVRDKLNMGDESYGLGVIVKTESTGLIGEQAAHREPNTGWTEATEFDPDIPGKRYDVYFNKFERTITFHGDYLERV*
Ga0163180_100082907	F042854	N/A	MRQLRGDTSVTPSEDPFIEAYTRRRIREMRLEHEMEEREINLDNVALGGYTVATMEAYDGKS*
Ga0163180_100082908	F013357	GGAGG	MARARYIPGALVEARNSKYGKGFGIIVKGPTMDTKASGRYRDLENPQPWFVVHWFEKPGSVDSYYMRRGKGQVEMTKNQIKLLRKK*
Ga0163180_100082909	F064629	GAG	MYPERKGLRNFTWTNDAINDWESIWHQLWRFGYKWEWQNADRYARRRGDIFNLFAVHNDAVRLDMAIPLPGIEVIEEVRELILDDINETHELDQLVGTIDRWLKRHYAP*