Scaffold Ga0163180_10005499

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10005499
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7011
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026437	Metagenome / Metatranscriptome	198	Y
F039870	Metagenome	163	Y
F086304	Metagenome / Metatranscriptome	111	Y
F099995	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1000549914	F086304	AGGAGG	MITLELSRICKNSGRDEGKIFLTGTTFAVTSEYHRWGKFERDICVVNNGTSNNGGYWVSDSYGNIVSMIEEQLRGARNE*
Ga0163180_1000549915	F039870	AGGAGG	MPDFKVYVTVYHRIDVEANNAEDAKELAKEEIWDDHIKDVIFDVEEVDNDNA*
Ga0163180_1000549916	F099995	AGGAGG	MAFLYKGTDDWSGVKWCVRTVYWHDSYGLNDMLVYGGDYNPYEKPENPLVEFYDMDSLVANTETGDEGHDARIKERGQFVSRYYLDTLNGTDRGTHASAPKFEDNWANGLNLHGGVERWSISGEFYTKAMQAVNADFKEWKENWMLEHEEVEDA*
Ga0163180_1000549917	F026437	AGGGGG	MKYYIGNIDEQYGEFEVEQSFLFATAGDDNQLMERLAKEWYGLDEHDSCGLREGMYWNDTMAYGAGSHYEVTKATYDELKDKRVFTEIYADEEVKYDRTPKTFEEVK*