Scaffold Ga0163180_10002521

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10002521
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10225
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED282 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007093	Metagenome	358	Y
F063608	Metagenome	129	Y
F071754	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_100025211	F071754	AGGA	MYITLPDSPVRKIFKCDSCENYHIKFFDPKHDRTYTPSEWEQIVTEGKEALYKALRVVREDPKFFA*
Ga0163180_100025212	F063608	N/A	VYLDVFRNEKGGIMAKKDSLRARLLKEYVKVSKTAPREPKTWKEVAARVRWERLRKILWRRYDYMQSL*
Ga0163180_100025215	F007093	N/A	MRVIKIWLLISMVSMPGMPSVKHTAELWFDEPKCEARRVDIENALYNAAAEQGINPVYVETWCLESNMFVINNS*