Basic Information | |
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Taxon OID | 3300012952 Open in IMG/M |
Scaffold ID | Ga0163180_10000574 Open in IMG/M |
Source Dataset Name | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21390 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (59.62%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | North Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 26.049 | Long. (o) | -17.4585 | Alt. (m) | Depth (m) | 80 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012584 | Metagenome | 279 | Y |
F016820 | Metagenome | 244 | Y |
F018189 | Metagenome | 236 | Y |
F024809 | Metagenome | 204 | Y |
F036270 | Metagenome | 170 | Y |
F038719 | Metagenome | 165 | Y |
F057382 | Metagenome | 136 | N |
F058913 | Metagenome | 134 | Y |
F073646 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0163180_1000057410 | F018189 | AGGA | MELSKEQMKRVIEELESSYDSKMFEDKNLEEIIDLFKKYLNSGETK* |
Ga0163180_1000057411 | F038719 | AGGAGG | MDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDNFQFGLTRKIINKAAARAANDMWS* |
Ga0163180_1000057413 | F024809 | GGAG | MNYSQKVLFDDWINKCPIEGVFVDEPVSQVKMDDGEFGYLIQVFLIINKEDWEQNQCPPGISENF* |
Ga0163180_1000057419 | F057382 | AGGAGG | MSKNDLTLTELKQLISTITFFQLGARTKELKTIKVKLKNQLKEMESK* |
Ga0163180_1000057422 | F073646 | AGGAGG | MLQSEYLELAIELYDIYSEHDIHHKKWLSARELAKLKGGPGLIAKVKRGKGFLSELKPIFADYVNTQTQYQSCNTPQQWTCKFDDWLFNEYEFTNQELDELRSDKNRQGGCKTSEKVTNG |
Ga0163180_1000057424 | F012584 | N/A | MKLKPIPENTFILNEDSLPTQSDADPYGKVMVFRKDVGWTVVQFTEVIQYVAMKHTHWTFTPETP* |
Ga0163180_1000057425 | F016820 | N/A | MNKKEFSYVVISTSGEKFEEIHGVYKDVEGACYGARSALTTLFPKHGDEAKIIRCEIISTEEAKTQFEDSKPKDLFEKADCEDGYCPLPTQQVS* |
Ga0163180_100005743 | F036270 | AGGAGG | MYIESTEKQGYHRGDPAGHRLLELIDLMGFDYDRFSSSGQQTYNEICTIIATVKEVKDETN* |
Ga0163180_100005744 | F058913 | AGGAGG | MKLTKEEARWLDDKWNDFYYYFQVEDMYIKDQEMYKSIGQKLSEVKQ* |
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