Scaffold Ga0163180_10000574

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10000574
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21390
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (59.62%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F018189	Metagenome	236	Y
F024809	Metagenome	204	Y
F036270	Metagenome	170	Y
F038719	Metagenome	165	Y
F057382	Metagenome	136	N
F058913	Metagenome	134	Y
F073646	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1000057410	F018189	AGGA	MELSKEQMKRVIEELESSYDSKMFEDKNLEEIIDLFKKYLNSGETK*
Ga0163180_1000057411	F038719	AGGAGG	MDSKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDNFQFGLTRKIINKAAARAANDMWS*
Ga0163180_1000057413	F024809	GGAG	MNYSQKVLFDDWINKCPIEGVFVDEPVSQVKMDDGEFGYLIQVFLIINKEDWEQNQCPPGISENF*
Ga0163180_1000057419	F057382	AGGAGG	MSKNDLTLTELKQLISTITFFQLGARTKELKTIKVKLKNQLKEMESK*
Ga0163180_1000057422	F073646	AGGAGG	MLQSEYLELAIELYDIYSEHDIHHKKWLSARELAKLKGGPGLIAKVKRGKGFLSELKPIFADYVNTQTQYQSCNTPQQWTCKFDDWLFNEYEFTNQELDELRSDKNRQGGCKTSEKVTNG
Ga0163180_1000057424	F012584	N/A	MKLKPIPENTFILNEDSLPTQSDADPYGKVMVFRKDVGWTVVQFTEVIQYVAMKHTHWTFTPETP*
Ga0163180_1000057425	F016820	N/A	MNKKEFSYVVISTSGEKFEEIHGVYKDVEGACYGARSALTTLFPKHGDEAKIIRCEIISTEEAKTQFEDSKPKDLFEKADCEDGYCPLPTQQVS*
Ga0163180_100005743	F036270	AGGAGG	MYIESTEKQGYHRGDPAGHRLLELIDLMGFDYDRFSSSGQQTYNEICTIIATVKEVKDETN*
Ga0163180_100005744	F058913	AGGAGG	MKLTKEEARWLDDKWNDFYYYFQVEDMYIKDQEMYKSIGQKLSEVKQ*