Scaffold Ga0163180_10000265

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10000265
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29939
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (53.66%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052644	Metagenome / Metatranscriptome	142	Y
F060034	Metagenome / Metatranscriptome	133	Y
F101345	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_100002651	F060034	AGGAGG	MTPVGDSAQSGTQIPQTDPFCVYNRDMNNSNTTKSLFSQSIDLTDDYLNFEYEKTFSSNMFDKYTRNNDLDPNLAIYHYGADRFVVQTMNYTYNGCLTGDSVHLGQFYD
Ga0163180_1000026525	F052644	AGTAG	MAAVATFKDFIKVREYITAKYNYYARMGRFDDLSPEERLEVDSCWELIRDLKGFIDNVEENFEDPDRNFDFLLDDKIIPINSLYKKDDPS*
Ga0163180_1000026539	F101345	N/A	MDKEDEWIMRVVVNVGRRTILCVSSDGDEKLVECDSPQEFINVVEFCKTVLDPEDIFYEEVKVARTR*