Scaffold Ga0163180_10000180

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10000180
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35529
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F012400	Metagenome	281	Y
F024571	Metagenome	205	Y
F041753	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1000018034	F024571	AGGAGG	MAFNVDVIDNETGEIYREGVLLANAHIFIAKEMGKIVREDIHTIELDGIDGGGEMEVHDIYVDFPEEKLKRELSADAIIRAREFWQYENGGGQVRK*
Ga0163180_1000018041	F012400	AGGA	MMKTRYTIKKFNGDDSYSWAVFRAADVRGMRSPIFLGDARPVVSGLSRGEARYHKSLLEAK*
Ga0163180_1000018044	F010027	GAGG	MAITANSRYMFEILSSDELAAHPKSGLKTVVVSGTCTNADGVSFDFIATNNLDQRYPERFKVNWNGKAARMPKVVGFGIADDVRTGRKVTEQLYFTRGARIAIARKCKELFPLWKQAS*
Ga0163180_1000018049	F041753	AGGAGG	MTRYQVHYERTTCAGVKRGRRTIKARNEAEAIIKCKSVVANSFGHWVNRLANEEA*