Scaffold Ga0163180_10000100

Overview

Basic Information

• Taxon OID: 3300012952
• Scaffold ID: Ga0163180_10000100
• Source Dataset Name: Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42658
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (64.29%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean
• Coordinates
  • Lat. (^o): 26.049
  • Long. (^o): -17.4585
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F003423	Metagenome / Metatranscriptome	487	Y
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F022423	Metagenome / Metatranscriptome	214	Y
F023355	Metagenome / Metatranscriptome	210	Y
F025614	Metagenome / Metatranscriptome	201	Y
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163180_1000010011	F003196	AGG	MQLQKEVLIDISDNATNSSAAQCDGLLLSGIVFPAAMTGSTVTFDFSFNGTTWYDVVETDGTEVSYSVSAGNVVRVDPSGWAFASPGFLRVTSSNSEAADRTINLIFKQS*
Ga0163180_1000010024	F023355	N/A	MELPGAYVARSNTTGEYCGNCKHYLNNYCIKFEEQVAPGGWCAVWEPYEI*
Ga0163180_1000010030	F014085	N/A	MDSLSDLREEAMQRAGGRCEWAYCNDNKWLELAHIQGIGMGGNKKRKFDINNVAILCKYHHDIYDGRQRVGTSVAYRDLLKGFLKRESNHF*
Ga0163180_1000010032	F025614	N/A	MKHMGKKPFDVNDVNIFTHPKYMKVWAQQFNKACGSDTFNVAPDMKKLRFLMDKFVIDYNYHLGQLEEE*
Ga0163180_1000010036	F022423	AGAAG	MAQDLSFISKTIQNMTETVQNTETLHKIIGTANQYAMTMKFPLDKTEWSDKQLDKYLSMIEKLVEMPVEYTQDDFESMDLLEKLESVGLKATEIEPGLQESGDMLGDIVNKMEQQNKYRDDLKCPCPNKLMVWDNRKSKKSDKSPDFTCSGKTPMECPMHTGKWKKSWWLDNSDIPEEWGV*
Ga0163180_1000010038	F040134	N/A	MTINNVKSKWHLQSIEYSGLGDKPNFILMNDEGDFKMIPVTKGIHNLRKLLDLEIE*
Ga0163180_1000010040	F010091	N/A	MDINEMLDEAENGKRTAILSRITDEAKPFWDGLEDRVKAGRPVKPFVVSRLLKEHYNIKISETAVRHHFQNIVDANVKEN*
Ga0163180_100001009	F003423	GGAGG	MEEFDAPQEHGVKQMRETIDRKDDAIKKLEAELASYKDKEIDNVFGKLGLSTDKGFGKALKQVYDGPIDTESISQFAKEEYGYESTGQVQEVTQPVSEPIIQDDARSRVAALDANSVSDVPLSTNEELAKALQGANVKDSLRARLTIMEQDKTNK*