Scaffold Ga0164300_10007983

Overview

Basic Information

• Taxon OID: 3300012951
• Scaffold ID: Ga0164300_10007983
• Source Dataset Name: Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3190
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Mt. Pleasant research farm, Cornell University, New York
• Coordinates
  • Lat. (^o): 42.4531
  • Long. (^o): -76.3842
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019401	Metagenome / Metatranscriptome	230	Y
F042588	Metagenome / Metatranscriptome	158	Y
F062211	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164300_100079832	F062211	GAGG	MNRTVHVCRLALIGVLLLALPSPVLANWWIVRSSDKKCLVVDIEPMGKDKSVTKIGEKVYLTREEAEEDVKRLCK*
Ga0164300_100079833	F019401	N/A	MGAVGTGREDMSEPVAKDLNEAKELREVIDALRADNGRLLRLLIAGFVSDARPEHKELTKVLTHHPKLRNWLGAGELRNLNANQNQITQREDSDKSSVQPTTIKARHRRGRRGKGKMGSGR*
Ga0164300_100079836	F042588	AGGA	MTNKIFRMLLKAIAAFAITASFGSASFAGEITIREGKRYCATLALNSVERLADNALIARKFRALGFSSVRVSGTGAKRRVEGVWHRKDASTTLPRQIVAVAGL*