Scaffold Ga0163108_10650917

Overview

Basic Information

• Taxon OID: 3300012950
• Scaffold ID: Ga0163108_10650917
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 681
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F012582	Metagenome / Metatranscriptome	279	Y
F055198	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163108_106509171	F055198	GGA	MSKFEEVSCKVLGVILFLLIVIMGLQLTGCTCYDVPPPPIELEYIDEVKMENYAYIK
Ga0163108_106509172	F012582	N/A	MIQWAEENKIRTKRNGNYEIPSRSNVEWKEDFKFVTKLDSMLADGLDVKLKKKEMEMCNKLYRFYGSVYVKI*
Ga0163108_106509173	F003091	AGGAG	MLPRKPITKPGEGKQRQKHVSQERYLEERYQISVGLKGPKRLEGEEFEDYKLRMKAENGLLKEYLRGVWVKNED*