NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163108_10305003

Scaffold Ga0163108_10305003


Overview

Basic Information
Taxon OID3300012950 Open in IMG/M
Scaffold IDGa0163108_10305003 Open in IMG/M
Source Dataset NameMarine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameThe Central Pacific Ocean
CoordinatesLat. (o)10.0Long. (o)-145.0Alt. (m)Depth (m)155
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012860Metagenome276N
F029245Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0163108_103050031F029245GGAMVEIVIALLMYIGIDLKEHVPYDNIGDCLKAKRLSERSSGPDGPRLECRPVTAEVEIWKEDGKKH
Ga0163108_103050034F012860N/ARHLVHRWRDNSDCRAAMIEIWFLLVLMTIQDTTPLIYKSFMGYESQEVCEEMAVLAKDFMMEIEMRRGTGDERTIKMESFCIPFEIFESEKPKGPKVGA*

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