Scaffold Ga0163108_10073207

Overview

Basic Information

• Taxon OID: 3300012950
• Scaffold ID: Ga0163108_10073207
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2177
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F010947	Metagenome	297	Y
F024415	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163108_100732073	F004163	AGGAG	MKQLKKTVIELKQYLERSLPLILIGAVLGYAFAQHLEAQTPKGIGFATVEDMSFLVQELKECREGSLSEGDGYE*
Ga0163108_100732074	F024415	GAGG	MQIKAGDLVKLHPEFRHTNLIEGNPYHATGLGIVVRAKDKDTPPVTYVKEYHVFWHESGERTINAYASLVKVTGEEI*
Ga0163108_100732078	F010947	N/A	NKNKDGDLNGIVFNKGDLVSYKPCEGDSLGIVLEQDGIMASVQWTKEPDDFNIQRRIFVSSLKLRSGVNK*