Scaffold Ga0163108_10029744

Overview

Basic Information

• Taxon OID: 3300012950
• Scaffold ID: Ga0163108_10029744
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3519
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019113	Metagenome	231	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163108_100297442	F019113	N/A	METFEVGDLVRDKLNDGAGNYGLGVVVKTESTGLIGEQAAHREPNTGWTEATEFDPDIPGKRYDVYFNKFEKTITFHGDYLEKA*
Ga0163108_100297444	F064629	GAGG	VTRLYEDVSPDFVDHPARIGLRNFTWTNAAINDWEEIWHQLWRLGYKWEWQNSDRYVRRYGETFNLYAVHNDAVRLDMAIPLPGIVVIEEVREMILEDANDSPELDHLVATISRWLKSHYAP*
Ga0163108_100297445	F062279	AGGAG	MYERMKAFLRRCVDLVVAFILIGAMFAYLMINSVIATQVINDLRLDTYVSYETGFGVVLLVLFLGWGPVWLMRSLDDRR*