Scaffold Ga0163108_10006510

Overview

Basic Information

• Taxon OID: 3300012950
• Scaffold ID: Ga0163108_10006510
• Source Dataset Name: Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8159
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location

• Location Name: The Central Pacific Ocean
• Coordinates
  • Lat. (^o): 10.0
  • Long. (^o): -145.0
  • Depth (m): 155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F017121	Metagenome	242	Y
F100958	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163108_100065101	F017121	N/A	IKKLLSQARSFAAYSDRLDKIESKLERFEKLADENESLWQYLDEQKEMDGIWTGSADEFQDEISDMMVRHMKPQGDA*
Ga0163108_1000651013	F013357	GGAG	MARARYIPGALVEARNSKYGKGFGIILTGPTLDTKAATRYRDLITPQQWFKVHWFEKPGNVNWYYMNRNNGQLDMSKNQIKLVRR*
Ga0163108_100065107	F100958	AGGAG	MVFHGDYEVDFEIYEKREGDVRSKLLGHMPGVNALDAKLRWVEAHETPHEKFDKIQALFPLKEWK*