NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126375_10199915

Scaffold Ga0126375_10199915


Overview

Basic Information
Taxon OID3300012948 Open in IMG/M
Scaffold IDGa0126375_10199915 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1311
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006961Metagenome361Y
F008582Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0126375_101999151F006961AGCAGGMKSDELEPDDFVLLGSYPPTEAAKLLERFHEVGIAFRAQPRTPPPEPGPMILIDISVDSTRAGEVARIHHDLFGDGPPNYASSFFRAHRNI*
Ga0126375_101999152F008582N/AMATKLVLKVAGLIGLLALISTGYCFWLMTVPLSYDWVPVVLVGFVVATGVFVISLITSLVALIRLRRSSRGSNVSQIRPTI*

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