Scaffold Ga0137410

Basic Information
Taxon OID	3300012944 Open in IMG/M
Scaffold ID	Ga0137410_10092514 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2229
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2229

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002853	Metagenome / Metatranscriptome	526	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F015771	Metagenome / Metatranscriptome	252	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137410_100925141	F009917	AGGA	MGSSGWTYVAIVFSMGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEQQGIKLEEMPMVNYVDLRNGGRHR*
Ga0137410_100925142	F002853	GGAGG	MGRGAQGQTQSLTDQQLNQTNALNQQLLGQQQSVGNLLTPQFQSILNNPGFSAADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSELTDDLARQKGVAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGMDSNLLGRTLGIPAELLNVRANSSRNNGGFFSSLGSSLGGALGGVPGLFL*
Ga0137410_100925143	F007488	N/A	MKIRAYEKSDLEALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEDGKGIAGAALLRLTAEAYLLLDPDAGSPREKWESLLALHEVTRRDALARGLEDVHAWLPPAITKKFGKRLTRLGWVRDDEWTPYCKRLT*
Ga0137410_100925144	F106044	N/A	MRLGILIPGDTVTLNAAFTFDLQDPNDNQTVSAVLTTLQGRTPHVTLTQTDNATISVVVTI*
Ga0137410_100925145	F015771	N/A	WFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASGPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137410_10092514

Overview

Ecosystem & Geography

Associated Families

Sequences