Scaffold Ga0137410_10000302

Overview

Basic Information

• Taxon OID: 3300012944
• Scaffold ID: Ga0137410_10000302
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34954
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F007333	Metagenome / Metatranscriptome	353	Y
F101737	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137410_1000030215	F000858	GGAG	MNGYLLAAYAATWIIHIGYLATLVSRYARLKREIDDLKKK*
Ga0137410_1000030227	F101737	AGGA	MSSKTGTWLMAAGAFIVFVGLCFLPAAFGADGDRTMLGAGSVVIAMGLVMIAGGFYIKARELATGAPATAPTSAKRNRSKSICDQCVENEPVIQCRVHQLHLCADCLNKHYDFRSCAYVPSTRRGNPKSSAAAYSQASSG*
Ga0137410_100003028	F007333	AGGAGG	VHEELNKARTLGLAVALGAALGAAGGAVTGHIGVWVGAGIAAYIALTLAHDIWKPKANDQRQTTND*