Scaffold Ga0164241_10007998

Overview

Basic Information

• Taxon OID: 3300012943
• Scaffold ID: Ga0164241_10007998
• Source Dataset Name: Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9374
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Labilitrichaceae → Labilithrix → Labilithrix luteola (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Emeryville, California
• Coordinates
  • Lat. (^o): 37.83
  • Long. (^o): -122.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046467	Metagenome / Metatranscriptome	151	N
F065927	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164241_100079985	F065927	AGGA	MDSNTRPVLKSIESNSARPFQALDHFVTSGGMRVSYYALSLDQVPADFFADPDGTWSYELLSRAAGFASHSGVAIGALRAPFNGHPEGAAVVTLNALTRPYVAIIECPIAYEYVEPSEGSASSAA*
Ga0164241_100079986	F046467	GAG	MSLRRRKHGTKLNSAISIRGELGQTENVSDLRDPDRDPDHLLAPERLIELENAAEPARKRLSELPAPALELVHAWLTAELAVARERALEVADFEFAECVCEMEQRLSFPGSFMRDAQASLRIQAVLGARAQFRVIQGGG*