Scaffold Ga0162652_100060290

Overview

Basic Information

• Taxon OID: 3300012941
• Scaffold ID: Ga0162652_100060290
• Source Dataset Name: Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 632
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Ranch near Red Deer, Alberta, Canada
• Coordinates
  • Lat. (^o): 52.172047
  • Long. (^o): -113.738964

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072697	Metagenome	121	N
F076437	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0162652_1000602901	F076437	N/A	TGPEFKQRQIAFLNRIRDADPQQRVIDRAMLNEQNELGLILDRSVEMNRIPDLMRTLLTQMAREFPEQDLTVIAYTPSSPPQKVGTAHLDSRTKEMNYLPEY*
Ga0162652_1000602902	F072697	N/A	MINTIDDFMKRFGSGETVDDQQAAQLHDRFVSARTEDSQFDNRAYHEAAAEYIGKLPDDQFRNAARNAVTQVPPQQRQDLLGGLLGALQGGSAG