NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0162652_100024159

Scaffold Ga0162652_100024159


Overview

Basic Information
Taxon OID3300012941 Open in IMG/M
Scaffold IDGa0162652_100024159 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)871
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameRanch near Red Deer, Alberta, Canada
CoordinatesLat. (o)52.172047Long. (o)-113.738964Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005864Metagenome / Metatranscriptome388Y
F006486Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0162652_1000241591F006486N/AMFEADFVSKDSDQTETAPREFKLGHLGNLNQVIKALGVTIRAMADGTLDSQVGARICNGLGIMRACLETQKLEQLEARMDEIADRVARDRTNAARERTSTHEAQRPSH*
Ga0162652_1000241592F005864N/AMLEKIEAKLVPPERKWLRAIIHEGDAEAVVKEKQEKALAEHVARHPEDVGLTVEDFKWILRVIVRPAAPG*

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